SFT transactions incurred by you will be reported by the respective reporting entities to the IT department. Incase your 26AS incorporates these transactions, you simply need to ensure that the income related to those transactions has been duly offered to tax / accounted for. Any mismatch or discrepancy between the high-value transaction viz-a-viz the tax return filed by the assessee can trigger the issuance of notices by the IT officers.
For eg. If you have done a Fixed Deposit with a bank for say Rs 15 lacs during the FY, then the same will appear in 26AS as per the reporting done by the bank. You have to ensure that you have appropriately accounted for the income from which FD is made and interest income earned from that FD while filing your tax return.
So, the SFT transactions appearing in your 26AS are correct and you are accurately filing tax returns, just go ahead and file your ITR same as in a normal scenario.