Return u/s 139 (9)

Hi there,
My uncle is having a partnership firm whoch was incorporated on 12.1.2013.. The total income calculated by the return uploader was Rs 151865 and the same was filed on 24.10.2013.. He did not provide for deduction on account of partners remuneration. Hence the total tax demand along with interest arrived at Rs 52367. The person on account of lack of knowledge then filed a revised return on 28.10.2013. The return was treated as defective and a letter dated 28.11.2014 was received asking to file a return us 139(9). However the same was ignored till date.. What should i do now to rectify this case..