I very well know what the problem is although it is a bit late to reply on a year ago query, sorry for that.
Section 234B specifically mentioned what to be deducted from tax payable while calculating interest and in that section only 5 things are mentioned and relief of 89 is not deductible from that assessed tax, let me simplify the calculation.
Interest is payable on "assessed tax" which is calculated on tax payable on total income and the tax on the total income determined by reducing the amount of TDS, relief u/s 90 & 90A, 91 tax credit allowed under section 147 or section 153A.
As section 89 is not specifically mentioned thus can not be deducted from total income for calculating assessed tax thus interest will be payable on that amount.
Extract of the section In this section,"assessed tax" means the tax on the total income determined under sub-section (1) of section 143 and where a regular assessment is made, the tax on the total income determined under such regular assessment as reduced by the amount of,—
(i) any tax deducted or collected at source in accordance with the provisions of Chapter XVII on any income which is subject to such deduction or collection and which is taken into account in computing such total income;
(ii) any relief of tax allowed under section 90 on account of tax paid in a country outside India;
(iii) any relief of tax allowed under section 90A on account of tax paid in a specified territory outside India referred to in that section;
(iv) any deduction, from the Indian income-tax payable, allowed under section 91, on account of tax paid in a country outside India; and
(v) any tax credit allowed to be set off in accordance with the provisions of section 115JAA or section 115JD.