Capital Gain and Speculative Income

I have loss from Speculative and capital loss from shares. I did not bifurcate total loss and filed ITR-2. I treat all the lose from capital gain and filed ITR-2. Ideally, I should file ITR-3 as major proportion of loss is from Speculative business.
Will my return be processed or come under scrutiny ? Also, If I receive notice then can I carry forward my loss in ITR-3 ?