GSTR-9: Common Challenges in Filing

Chaitra Seetharam , Last updated: 19 December 2024  
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GSTR-9 is an annual return that every regular GST-registered taxpayer must file. It consolidates all the monthly and quarterly returns (GSTR-1, GSTR-2A, GSTR-2B, and GSTR-3B) submitted during the financial year.

Filing GSTR-9, the annual return under GST can be a complex business process. Several common challenges arise during this process. Here are some key challenges faced by businesses while filing GSTR-9:

GSTR-9: Common Challenges in Filing

Issues with Reconciliation

Discrepancies between GSTR-1, GSTR-3B, and the Books of Accounts are common for taxpayers. These discrepancies often arise from data entry errors or timing mismatches. Discrepancies between the claimed Input Tax Credit (ITC) and GSTR-2A/2B can occur due to vendor delays or omissions.

Challenges in Data Compilation

Companies with a high volume of transactions often struggle to consolidate their financial data for the entire year. Classifying transactions such as taxable, exempt, nil-rated, and zero-rated supplies necessitates thorough analysis. Determining which Input Tax Credit (ITC) is eligible or ineligible for reversal or adjustment is a time-consuming process.

Mistakes in Previous Tax Returns

Mistakes in GSTR-1, GSTR-3B, or GSTR-4 cannot be corrected when filing GSTR-9, leading to inaccurate reporting. Failing to report certain sales or Input Tax Credit (ITC) in monthly returns may result in underreporting or penalties.

Reversal of Input Tax Credit (ITC)

Complex scenarios for ITC reversal can arise from non-payment to suppliers within 180 days. Not monitoring vendor payments may lead to ITC reversals. Identifying the correct reversal provision, accurate calculation of reversal amount and reporting reversal in GSTR-9 are the issues related to ITC.

Input Tax Credit (ITC) on Exempt and Blocked Supplies

Ensure accurate calculation of ITC on exempt supplies while avoiding the input of blocked supplies, as inaccuracies may lead to compliance issues.

Reverse Charge Mechanism (RCM) and Input Tax Credit (ITC) Reconciliation 

Businesses may find it difficult to align the taxes paid under RCM with the ITC claimed for the related supplies.

Time Limitations and Technical Challenges

The annual deadline for filing returns can be stressful for businesses, especially during peak seasons. The GST portal may encounter technical issues, leading to delays and frustration. Consistent non-compliance could result in investigations, audits, and legal actions.

 

Ways to correct and prevent errors or mistakes

  • Maintain comprehensive records of all transactions, including invoices, payments, and documents related to taxes.
  • To simplify the filing process and improve accuracy, utilize dependable GST software to automate calculations and generate reports.
  • It is advisable to consult with Tax Consultants or Chartered Accountants for guidance on complex issues.
  • Stay informed about the latest GST rules and regulations. Keep an eye on updates in GST laws and guidelines issued by the GST Council.
  • Begin preparing for GSTR-9 well in advance of the deadline to avoid a last-minute rush. Businesses can ensure accurate and timely filing, thereby minimizing the risk of penalties and audits.

In conclusion, recognizing the common mistakes made during GSTR-9 filing is essential for improving the compliance process. By adopting the recommended solutions, businesses can correct past errors and ensure smoother, error-free filings in the future.

FAQs

What challenges do small taxpayers face while filing GSTR-9?

Small taxpayers often lack the expertise necessary for GST compliance and may struggle with: 

  • Understanding the requirements of GSTR-9. 
  • Reconciling data without assistance from professionals or accounting software.
 

What if form GSTR-9 is wrongly filed?

If GSTR-9 is filed incorrectly, it can result in the following consequences:

  • Penalties: Imposed for late filing or providing incorrect information.
  • Interest: Charged on any delayed tax payments.
  • Increased Scrutiny: Leading to audits and investigations.
  • Legal Action: Possible in severe cases of fraud or intentional misrepresentation.

What is the turnover limit to file GSTR 9?

The turnover threshold for mandatory filing of GSTR-9 is set at Rs. 2 crore. If your annual turnover is below this amount, filing GSTR-9 is optional. However, it is always advisable to consult a tax professional to ensure compliance with the latest GST rules and regulations.

Who is exempted from filing GSTR 9?

All registered taxpayers must file GSTR-9, except for: casual taxpayers, input service distributors, and non-resident taxpayers.

Is the HSN code mandatory in GSTR 9?

Reporting HSN (Harmonized System of Nomenclature) codes in GSTR-9 is mandatory, but the required level of detail depends on the taxpayer's aggregate turnover for the financial year

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Chaitra Seetharam
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Category GST   Report

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